Annotation of co-expression genes

PH01000036G1140's details annotation

1.Annotation

ICBR annotation: ENTH domain containing protein, expressed

Blast result AT2G43160 : 2.00E-148
Blast annotation: ENTH/VHS family protein

2.Location

Scaffold: PH01000036
Strand: -

RegionStartEnd
gene682058687929
mRNA682058687929
exon682058682893
exon682982683933
exon684339684538
exon684754684974
exon685009685104
exon685187685228
exon685391685750
exon685851685996
exon686121686204
exon686333686411
exon686503686582
exon686735686786
exon686916687929
CDS682385682893
CDS682982683933
CDS684339684538
CDS684754684974
CDS685009685104
CDS685187685228
CDS685391685750
CDS685851685996
CDS686121686204
CDS686333686411
CDS686503686582
CDS686735686786
CDS686916686950

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001619RLK-Pelle_LysM (from iTAK)
Trihelix Transcription_Regulator(from PlantTFDB)
Mo-molybdopterin cofactor biosynthetic process,
molybdopterin cofactor biosynthetic process,
SOS_response
5-amino-6-(5-phosphoribosylamino)uracil reductase activity,
riboflavin biosynthetic process,
Endocytosis
Homologous_recombination

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01417.19ENTH26145

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Endocytosisepsinko04144K12471

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.