PH01000038G1650's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G62440 : 3.90E-42
Blast annotation: Protein of unknown function (DUF3223)
2.Location
Scaffold: PH01000038
Strand: +
| Region | Start | End |
| gene | 1197584 | 1204218 |
| mRNA | 1197584 | 1204218 |
| exon | 1197584 | 1198752 |
| exon | 1200725 | 1201049 |
| exon | 1201276 | 1204218 |
| CDS | 1198309 | 1198752 |
| CDS | 1200725 | 1201049 |
| CDS | 1201276 | 1201484 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000307 | amine metabolic process, quinone binding, copper ion binding, protein import into mitochondrial matrix, mitochondrial outer membrane translocase complex, Ribosome_biogenesis_in_eukaryotes transcription, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11523.7 | DUF3223 | 135 | 207 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005507 | copper ion binding |
| GO:0009308 | amine metabolic process |
| GO:0048038 | quinone binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.