|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | amine metabolic process, | 1.26E-05 | GO:0009308 | | quinone binding, | 3.32E-05 | GO:0048038 | | copper ion binding, | 0.0007657 | GO:0005507 | | protein import into mitochondrial matrix, | 0.002577883 | GO:0030150 | | mitochondrial outer membrane translocase complex, | 0.003936515 | GO:0005742 | | Ribosome_biogenesis_in_eukaryotes | 0.016946651 | KEGG | | transcription, DNA-dependent, | 0.031407822 | GO:0006351 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000038G1650 | Protein of unknown function (DUF3223) | AT5G62440 (3.90E-42) | | PH01000115G1360 | Protein of unknown function (DUF3223) | AT5G62440 (1.80E-42) | | PH01000256G0080 | Mitochondrial outer membrane translocase complex, subunit Tom7 | AT5G41685 (1.20E-14) | | PH01000306G1190 | Transducin/WD40 repeat-like superfamily protein | AT5G14050 (1.00E-164) | | PH01000990G0300 | Hyaluronan / mRNA binding family | AT4G16830 (1.80E-31) | | PH01006302G0030 | Transcription elongation factor (TFIIS) family protein | AT4G24200 (2.80E-50) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000014 | transcription, DNA-dependent,
Spliceosome
| details | | CFinderM000069 | Ribosome_biogenesis_in_eukaryotes
Ino80_complex
ATP-dependent_5'-3'_DNA_helicase_activity
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
rRNA methyltransferase activity,
rRNA (adenine) methyltransferase activity,
snoRNA binding,
snRNA_pseudouridine_synthesis
rRNA modification,
| details | | CFinderM000077 | transcription, DNA-dependent,
| details | | CFinderM000129 | GH9 Glycoside_Hydrolases
RLK-Pelle_LRR-IV (from iTAK)
| details | | CFinderM000205 | RLK-Pelle_LRR-XI-2 (from iTAK)
mRNA processing,
| details | | CFinderM000241 | signal peptidase complex,
Protein_export
signal peptide processing,
| details | | CFinderM000259 | transcription, DNA-dependent,
RNA_polymerase
Purine_metabolism
Pyrimidine_metabolism
| details | | CFinderM000306 | protein import into mitochondrial matrix,
mitochondrial outer membrane translocase complex,
large ribosomal subunit,
transcription, DNA-dependent,
| details | | CFinderM000411 | transcription, DNA-dependent,
nucleus,
bHLH Transcription_Regulator(from PlantTFDB)
| details |
4.Expression profilings |
