CFinderM000259's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
transcription, DNA-dependent,0.000124443GO:0006351
RNA_polymerase0.040108278KEGG
Purine_metabolism0.049296983KEGG
Pyrimidine_metabolism0.049296983KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01001149G0270DNA-directed RNA polymerase family proteinAT2G15430 (1.00E-130)
PH01001386G0150Mitochondrial substrate carrier family proteinAT1G72820 (4.90E-46)
PH01001925G0060Protein of unknown function (DUF640)AT1G07090 (2.20E-63)
PH01001976G0260RING/U-box superfamily proteinAT5G05810 (1.30E-53)
PH01002498G0040-- (-)
PH01006302G0030Transcription elongation factor (TFIIS) family proteinAT4G24200 (2.80E-50)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000014transcription, DNA-dependent,
Spliceosome
details
CFinderM000069Ribosome_biogenesis_in_eukaryotes
Ino80_complex
ATP-dependent_5'-3'_DNA_helicase_activity
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
rRNA methyltransferase activity,
rRNA (adenine) methyltransferase activity,
snoRNA binding,
snRNA_pseudouridine_synthesis
rRNA modification,
details
CFinderM000077transcription, DNA-dependent,
details
CFinderM000129GH9 Glycoside_Hydrolases
RLK-Pelle_LRR-IV (from iTAK)
details
CFinderM000205RLK-Pelle_LRR-XI-2 (from iTAK)
mRNA processing,
details
CFinderM000241signal peptidase complex,
Protein_export
signal peptide processing,
details
CFinderM000306protein import into mitochondrial matrix,
mitochondrial outer membrane translocase complex,
large ribosomal subunit,
transcription, DNA-dependent,
details
CFinderM000307amine metabolic process,
quinone binding,
copper ion binding,
protein import into mitochondrial matrix,
mitochondrial outer membrane translocase complex,
Ribosome_biogenesis_in_eukaryotes
transcription, DNA-dependent,
details
CFinderM000411transcription, DNA-dependent,
nucleus,
bHLH Transcription_Regulator(from PlantTFDB)
details

4.Expression profilings