Gene details

Annotation of co-expression genes

PH01000306G1190's details annotation

1.Annotation

ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed

Blast result AT5G14050 : 1.00E-164
Blast annotation: Transducin/WD40 repeat-like superfamily protein

2.Location

Scaffold: PH01000306
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000069	Ribosome_biogenesis_in_eukaryotes Ino80_complex ATP-dependent_5'-3'_DNA_helicase_activity rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA methyltransferase activity, rRNA (adenine) methyltransferase activity, snoRNA binding, snRNA_pseudouridine_synthesis rRNA modification,
coexpression network	CFinderM000306	protein import into mitochondrial matrix, mitochondrial outer membrane translocase complex, large ribosomal subunit, transcription, DNA-dependent,
coexpression network	CFinderM000307	amine metabolic process, quinone binding, copper ion binding, protein import into mitochondrial matrix, mitochondrial outer membrane translocase complex, Ribosome_biogenesis_in_eukaryotes transcription, DNA-dependent,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Ribosome biogenesis in eukaryotes	U3 small nucleolar RNA-associated protein 18	ko03008	K14553

10.Gene Ontology

GO Accession	GO Annotation
GO:0005515	protein binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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