PH01000040G1370's details annotation
1.Annotation
ICBR annotation: huntingtin-interacting protein HYPK, putative, expressed
Blast result AT3G06610 : 1.40E-27
Blast annotation: DNA-binding enhancer protein-related
2.Location
Scaffold: PH01000040
Strand: +
| Region | Start | End |
| gene | 911145 | 915618 |
| mRNA | 911145 | 915618 |
| exon | 911145 | 911908 |
| exon | 912993 | 913048 |
| exon | 913719 | 915618 |
| CDS | 911741 | 911908 |
| CDS | 912993 | 913048 |
| CDS | 913719 | 913824 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000183 | Oxidative_phosphorylation mitochondrial intermembrane space, protein import into mitochondrial inner membrane, mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), copper chaperone activity, ubiquinol-cytochrome-c reductase activity, mitochondrial electron transport, ubiquinol to cytochrome c, copper ion transport, ATP synthesis coupled proton transport, ribosome biogenesis, hydrogen ion transmembrane transporter activity, |
| coexpression network | CFinderM001031 | intracellular, translation, structural constituent of ribosome, protein import into mitochondrial inner membrane, Ribosome RLK-Pelle_L-LEC (from iTAK) large ribosomal subunit, ribosome biogenesis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.