PH01000047G1040's details annotation
1.Annotation
ICBR annotation: pleckstrin homology domain-containing protein, putative, expressed
Blast result AT5G19390 : 4.00E-106
Blast annotation: Rho GTPase activation protein (RhoGAP) with PH domain
2.Location
Scaffold: PH01000047
Strand: -
| Region | Start | End |
| gene | 739842 | 748976 |
| mRNA | 739842 | 748976 |
| exon | 739842 | 740950 |
| exon | 741025 | 741213 |
| exon | 743439 | 743505 |
| exon | 743828 | 744183 |
| exon | 744822 | 744860 |
| exon | 745086 | 745146 |
| exon | 745562 | 745611 |
| exon | 746263 | 746586 |
| exon | 747509 | 747736 |
| exon | 748071 | 748314 |
| exon | 748564 | 748976 |
| CDS | 740762 | 740950 |
| CDS | 741025 | 741213 |
| CDS | 743439 | 743505 |
| CDS | 743828 | 744183 |
| CDS | 744822 | 744860 |
| CDS | 745086 | 745146 |
| CDS | 745562 | 745611 |
| CDS | 746263 | 746586 |
| CDS | 747509 | 747736 |
| CDS | 748071 | 748314 |
| CDS | 748564 | 748844 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001541 | Terpenoid_backbone_biosynthesis 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 1,3-beta-D-glucan synthase complex, (1->3)-beta-D-glucan biosynthetic process, terpenoid biosynthetic process, iron-sulfur cluster assembly, |
| coexpression network | CFinderM001542 | guanyl-nucleotide exchange factor activity, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, small GTPase mediated signal transduction, signal transduction, terpenoid biosynthetic process, cellular component organization, Terpenoid_backbone_biosynthesis actin cytoskeleton organization, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14389.5 | Lzipper-MIP1 | 409 | 503 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0007165 | signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.