CFinderM001542's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
guanyl-nucleotide exchange factor activity,1.54E-05GO:0005085
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,0.003905517GO:0008685
small GTPase mediated signal transduction,0.007379894GO:0007264
signal transduction,0.010637008GO:0007165
terpenoid biosynthetic process,0.011878432GO:0016114
cellular component organization,0.015130101GO:0016043
Terpenoid_backbone_biosynthesis0.01613544KEGG
actin cytoskeleton organization,0.019197123GO:0030036
intracellular,0.020662887GO:0005622

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000047G1040Rho GTPase activation protein (RhoGAP) with PH domainAT5G19390 (4.00E-106)
PH01000047G1060Rho GTPase activation protein (RhoGAP) with PH domainAT5G19390 (8.00E-107)
PH01000072G1360-AT2G36835 (1.90E-31)
PH01000140G0530Leucine-rich repeat (LRR) family proteinAT3G15410 (1.40E-84)
PH01000652G0600guanyl-nucleotide exchange factors;GTPase binding;GTP bindingAT4G16340 (0.00E+00)
PH01001292G0230guanyl-nucleotide exchange factors;GTPase binding;GTP bindingAT4G16340 (0.00E+00)
PH01001470G0260-- (-)
PH01001978G0220actin bindingAT5G07740 (1.00E-129)
PH01002033G0310NAD(P)-binding Rossmann-fold superfamily proteinAT5G52810 (1.00E-49)
PH01003968G0050isoprenoid FAT1G63970 (7.70E-80)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000461STE_STE11 (from iTAK)
zinc_ion_transmembrane_transport
cellular component organization,
actin cytoskeleton organization,
details
CFinderM001163CAMK_CDPK (from iTAK)
guanyl-nucleotide exchange factor activity,
details
CFinderM001315STE_STE-Pl (from iTAK)
details
CFinderM001343Golgi-associated vesicle,
binding,
Terpenoid_backbone_biosynthesis
guanyl-nucleotide exchange factor activity,
COPI vesicle coat,
membrane coat,
details
CFinderM001371guanyl-nucleotide exchange factor activity,
small GTPase mediated signal transduction,
microtubule associated complex,
binding,
microtubule-based movement,
details
CFinderM001527PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
details
CFinderM001540DNA polymerase III complex,
alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
Terpenoid_backbone_biosynthesis
3-hydroxyacyl-CoA_dehydrogenase_activity
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
peptide-methionine-(S)-S-oxide reductase activity,
fatty acid metabolic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
details
CFinderM001541Terpenoid_backbone_biosynthesis
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
1,3-beta-D-glucan synthase complex,
(1->3)-beta-D-glucan biosynthetic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
details
CFinderM001575protein methylation,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
methyltransferase activity,
details
CFinderM001713microtubule associated complex,
microtubule-based movement,
microtubule motor activity,
guanyl-nucleotide exchange factor activity,
cellular component organization,
actin cytoskeleton organization,
small GTPase mediated signal transduction,
details
CFinderM001838ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
details

4.Expression profilings


Show details about module gene expression profiling