PH01000072G1360's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G36835 : 1.90E-31
Blast annotation: -
2.Location
Scaffold: PH01000072
Strand: -
| Region | Start | End |
| gene | 1059067 | 1062282 |
| mRNA | 1059067 | 1062282 |
| exon | 1059067 | 1059446 |
| exon | 1059499 | 1059567 |
| exon | 1060488 | 1060598 |
| exon | 1060690 | 1062282 |
| CDS | 1059423 | 1059446 |
| CDS | 1059499 | 1059567 |
| CDS | 1060488 | 1060598 |
| CDS | 1060690 | 1060932 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001542 | guanyl-nucleotide exchange factor activity, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, small GTPase mediated signal transduction, signal transduction, terpenoid biosynthetic process, cellular component organization, Terpenoid_backbone_biosynthesis actin cytoskeleton organization, intracellular, |
| coexpression network | CFinderM001713 | microtubule associated complex, microtubule-based movement, microtubule motor activity, guanyl-nucleotide exchange factor activity, cellular component organization, actin cytoskeleton organization, small GTPase mediated signal transduction, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.