PH01000051G1620's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT3G01490 : 1.00E-145
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000051
Strand: -
| Region | Start | End |
| gene | 1060859 | 1065279 |
| mRNA | 1060859 | 1065279 |
| exon | 1060859 | 1061452 |
| exon | 1061541 | 1061675 |
| exon | 1062136 | 1062310 |
| exon | 1062411 | 1062607 |
| exon | 1063960 | 1064081 |
| exon | 1065061 | 1065279 |
| CDS | 1061243 | 1061452 |
| CDS | 1061541 | 1061675 |
| CDS | 1062136 | 1062310 |
| CDS | 1062411 | 1062607 |
| CDS | 1063960 | 1064081 |
| CDS | 1065061 | 1065157 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000115 | Dof Transcription_Regulator(from PlantTFDB) AUX/IAA Transcription_Regulator(from iTAK) C2C2-Dof Transcription_Regulator(from iTAK) TKL-Pl-4 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07714.16 | Pkinase_Tyr | 52 | 281 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.