PH01000053G1520's details annotation
1.Annotation
ICBR annotation: exostosin family domain containing protein, expressed
Blast result AT3G45400 : 2.00E-150
Blast annotation: exostosin family protein
2.Location
Scaffold: PH01000053
Strand: +
| Region | Start | End |
| gene | 917139 | 921442 |
| mRNA | 917139 | 921442 |
| exon | 917139 | 919187 |
| exon | 920232 | 921442 |
| CDS | 918276 | 919187 |
| CDS | 920232 | 920747 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000538 | GT61 GlycosylTransferases RLK-Pelle_PERK-1 (from iTAK) GT47 GlycosylTransferases Aminoacyl-tRNA_biosynthesis threonyl-tRNA aminoacylation, response to oxidative stress, histidine_catabolic_process_to_glutamate_and_formamide |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT47 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03016.14 | Exostosin | 98 | 404 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.