PH01000053G1610's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G13410 : 1.10E-32
Blast annotation: -
2.Location
Scaffold: PH01000053
Strand: +
| Region | Start | End |
| gene | 954314 | 960637 |
| mRNA | 954314 | 960637 |
| exon | 954314 | 954888 |
| exon | 956081 | 956172 |
| exon | 956270 | 956405 |
| exon | 958341 | 958400 |
| exon | 958624 | 958686 |
| exon | 958782 | 958982 |
| exon | 959057 | 959159 |
| exon | 959240 | 959357 |
| exon | 959706 | 959796 |
| exon | 960219 | 960637 |
| CDS | 954745 | 954888 |
| CDS | 956081 | 956172 |
| CDS | 956270 | 956405 |
| CDS | 958341 | 958400 |
| CDS | 958624 | 958686 |
| CDS | 958782 | 958982 |
| CDS | 959057 | 959159 |
| CDS | 959240 | 959357 |
| CDS | 959706 | 959796 |
| CDS | 960219 | 960245 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001362 | Protein_processing_in_endoplasmic_reticulum mannose biosynthetic process, Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation phosphomannomutase activity, histone_lysine_methylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.