PH01000058G0470's details annotation
1.Annotation
ICBR annotation: amidohydrolase, putative, expressed
Blast result AT3G55850 : 3.90E-46
Blast annotation: Amidohydrolase family
2.Location
Scaffold: PH01000058
Strand: +
| Region | Start | End |
| gene | 285079 | 288375 |
| mRNA | 285079 | 288375 |
| exon | 285079 | 286101 |
| exon | 286343 | 286493 |
| exon | 287419 | 287605 |
| exon | 287691 | 287806 |
| exon | 288103 | 288375 |
| CDS | 285858 | 286101 |
| CDS | 286343 | 286493 |
| CDS | 287419 | 287605 |
| CDS | 287691 | 287806 |
| CDS | 288103 | 288277 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000408 | Group-Pl-3 (from iTAK) histidine_catabolic_process_to_glutamate_and_formamide hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides, |
| coexpression network | CFinderM000538 | GT61 GlycosylTransferases RLK-Pelle_PERK-1 (from iTAK) GT47 GlycosylTransferases Aminoacyl-tRNA_biosynthesis threonyl-tRNA aminoacylation, response to oxidative stress, histidine_catabolic_process_to_glutamate_and_formamide |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07969.10 | Amidohydro_3 | 161 | 288 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005737 | cytoplasm |
| GO:0016812 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides |
| GO:0019556 | histidine catabolic process to glutamate and formamide |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.