PH01000058G2000's details annotation
1.Annotation
ICBR annotation: tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed
Blast result AT2G13440 : 0.00E+00
Blast annotation: glucose-inhibited division family A protein
2.Location
Scaffold: PH01000058
Strand: -
| Region | Start | End |
| gene | 1235425 | 1241082 |
| mRNA | 1235425 | 1241082 |
| exon | 1235425 | 1235926 |
| exon | 1236375 | 1236557 |
| exon | 1236739 | 1236831 |
| exon | 1237263 | 1237480 |
| exon | 1237616 | 1237782 |
| exon | 1238109 | 1238251 |
| exon | 1238345 | 1238537 |
| exon | 1238993 | 1239135 |
| exon | 1239615 | 1239695 |
| exon | 1239864 | 1240043 |
| exon | 1240700 | 1240851 |
| exon | 1240888 | 1241082 |
| CDS | 1235729 | 1235926 |
| CDS | 1236375 | 1236557 |
| CDS | 1236739 | 1236831 |
| CDS | 1237263 | 1237480 |
| CDS | 1237616 | 1237782 |
| CDS | 1238109 | 1238251 |
| CDS | 1238345 | 1238537 |
| CDS | 1238993 | 1239135 |
| CDS | 1239615 | 1239695 |
| CDS | 1239864 | 1240043 |
| CDS | 1240700 | 1240851 |
| CDS | 1240888 | 1241002 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001306 | mRNA_catabolic_process polyribonucleotide_nucleotidyltransferase_activity CE8 Carbohydrate_Esterases RNA binding, conversion_of_methionyl-tRNA_to_N-formyl-methionyl-tRNA methionyl-tRNA formyltransferase activity, 3'-5'-exoribonuclease activity, hydroxymethyl-, formyl- and related transferase activity, |
| coexpression network | CFinderM001450 | tRNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01134.21 | GIDA | 6 | 182 |
| PF13932.5 | GIDA_assoc | 194 | 223 |
| PF01134.21 | GIDA | 222 | 303 |
| PF13932.5 | GIDA_assoc | 306 | 497 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008033 | tRNA processing |
| GO:0050660 | flavin adenine dinucleotide binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.