CFinderM001306's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
mRNA_catabolic_process4.72E-05GO:0006402
polyribonucleotide_nucleotidyltransferase_activity8.02E-05GO:0004654
CE8 Carbohydrate_Esterases0.006171473GFam
RNA binding,0.007175042GO:0003723
conversion_of_methionyl-tRNA_to_N-formyl-methionyl-tRNA0.010067384GO:0071951
methionyl-tRNA formyltransferase activity,0.011405343GO:0004479
3'-5'-exoribonuclease activity,0.012829005GO:0000175
hydroxymethyl-, formyl- and related transferase activity,0.020516788GO:0016742

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000005G1030TPX2 (targeting protein for Xklp2) protein familyAT2G35880 (1.50E-48)
PH01000021G2400FAD/NAD(P)-binding oxidoreductase family proteinAT4G30720 (3.00E-108)
PH01000026G2100Protein kinase superfamily proteinAT2G39190 (2.00E-176)
PH01000058G2000glucose-inhibited division family A proteinAT2G13440 (0.00E+00)
PH01000090G0050-- (-)
PH01000103G1610pectin methylesterase 31AT3G29090 (2.00E-139)
PH01000104G0640P-type ATP-ase 1AT4G33520 (0.00E+00)
PH01000817G0470formyltransferase, putativeAT1G66520 (3.00E-124)
PH01002314G0120polyribonucleotide nucleotidyltransferase, putativeAT3G03710 (3.00E-115)
PH01002314G0160polyribonucleotide nucleotidyltransferase, putativeAT3G03710 (1.40E-48)
PH01003539G0020CRS1 / YhbY (CRM) domain-containing proteinAT4G29750 (2.00E-169)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000289RLK-Pelle_LRR-XI-1 (from iTAK)
glycogen biosynthetic process,
Starch_and_sucrose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
details
CFinderM000483GRAS Transcription_Regulator(from PlantTFDB)
TKL-Pl-4 (from iTAK)
Arachidonic_acid_metabolism
glycogen biosynthetic process,
amino_acid_transmembrane_transport
details
CFinderM000618TKL-Pl-4 (from iTAK)
Valine,_leucine_and_isoleucine_degradation
details
CFinderM000626mRNA_catabolic_process
polyribonucleotide_nucleotidyltransferase_activity
CMGC_MAPK (from iTAK)
3'-5'-exoribonuclease activity,
RNA binding,
RNA processing,
Purine_metabolism
RNA_degradation
Pyrimidine_metabolism
details
CFinderM000901mRNA_catabolic_process
polyribonucleotide_nucleotidyltransferase_activity
RNA binding,
3'-5'-exoribonuclease activity,
CE8 Carbohydrate_Esterases
cell wall,
cell wall modification,
pectinesterase activity,
RNA processing,
details
CFinderM001237details
CFinderM001396Selenocompound_metabolism
Aminoacyl-tRNA_biosynthesis
RLK-Pelle_LRR-Xa (from iTAK)
tRNA aminoacylation for protein translation,
aminoacyl-tRNA ligase activity,
methionyl-tRNA aminoacylation,
nucleotide binding,
methionine-tRNA ligase activity,
cytoplasm,
details
CFinderM001442GT37 GlycosylTransferases
RLK-Pelle_LRR-Xa (from iTAK)
cell wall biogenesis,
Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
galactoside 2-alpha-L-fucosyltransferase activity,
details
CFinderM001450tRNA processing,
details

4.Expression profilings


Show details about module gene expression profiling