Gene details

Annotation of co-expression genes

PH01000060G1600's details annotation

1.Annotation

ICBR annotation: plus-3 domain containing protein, expressed

Blast result AT2G16485 : 2.00E-173
Blast annotation: nucleic acid binding;zinc ion binding;DNA binding

2.Location

Scaffold: PH01000060
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000946	SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) actin cytoskeleton organization, transcription initiation, DNA-dependent, mitochondrial respiratory chain, sister_chromatid_cohesion chromosome condensation, CMGC_MAPK (from iTAK) actin binding, chromosome organization, ribulose-phosphate 3-epimerase activity,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
Transcription_Regulator(from iTAK)	SWI/SNF-BAF60b
Transcription_Regulator(from PlantTFDB)	C3H

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0003676	nucleic acid binding
GO:0003677	DNA binding
GO:0005515	protein binding
GO:0005634	nucleus
GO:0006352	DNA-dependent transcription, initiation
GO:0008270	zinc ion binding
GO:0016570	histone modification

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.