CFinderM000946's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)0.000412803GFam
histone modification,0.000978122GO:0016570
C3H Transcription_Regulator(from PlantTFDB)0.001622376GFam
actin cytoskeleton organization,0.002786092GO:0030036
transcription initiation, DNA-dependent,0.004011855GO:0006352
mitochondrial respiratory chain,0.018732139GO:0005746
sister_chromatid_cohesion0.020983737GO:0007062
chromosome condensation,0.027963459GO:0030261
CMGC_MAPK (from iTAK)0.028664354GFam
actin binding,0.031911643GO:0003779
chromosome organization,0.041900662GO:0051276
ribulose-phosphate 3-epimerase activity,0.045608476GO:0004750

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000060G1600nucleic acid binding;zinc ion binding;DNA bindingAT2G16485 (2.00E-173)
PH01000440G1000profilin 3AT5G56600 (5.70E-56)
PH01000489G0310THO2AT1G24706 (0.00E+00)
PH01000541G0730Ras-related small GTP-binding family proteinAT2G47170 (2.00E-100)
PH01000591G0690cytochrome-c oxidases;electron carriersAT4G21105 (2.00E-21)
PH01000779G0090LUC7 N_terminus domain-containing proteinAT5G51410 (8.20E-98)
PH01000781G0080actin 3AT3G53750 (0.00E+00)
PH01000818G0250profilin 1AT2G19760 (1.50E-56)
PH01001214G0520SART-1 familyAT5G16780 (9.00E-162)
PH01001268G0460RNA-binding (RRM/RBD/RNP motifs) family proteinAT2G33435 (1.10E-43)
PH01001631G0340MAP kinase 6AT2G43790 (3.00E-108)
PH01001926G0020Uncharacterised protein family SERFAT2G23090 (9.20E-32)
PH01002324G0030Structural maintenance of chromosomes (SMC) family proteinAT3G54670 (0.00E+00)
PH01002885G0150-AT1G03910 (0.00E+00)
PH01003703G0180DNA-binding bromodomain-containing proteinAT1G58025 (1.20E-52)
PH01003768G0070homolog of yeast FIP1 [V]AT5G58040 (2.00E-101)
PH01003943G0040Aldolase-type TIM barrel family proteinAT1G63290 (2.70E-93)
PH01004889G0040nucleic acid binding;zinc ion binding;DNA bindingAT2G16485 (1.00E-180)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000343details
CFinderM000382ribulose-phosphate 3-epimerase activity,
racemase and epimerase activity, acting on carbohydrates and derivatives,
endoplasmic reticulum,
pentose-phosphate shunt,
details
CFinderM000505Phagosome
regulation of actin filament polymerization,
cytoskeleton,
GRAS Transcription_Regulator(from PlantTFDB)
Rho GDP-dissociation inhibitor activity,
details
CFinderM000534CMGC_GSK (from iTAK)
transcription factor TFIID complex,
intracellular,
Basal_transcription_factors
Phagosome
details
CFinderM000660Phagosome
mitochondrial inner membrane,
GTnc GlycosylTransferases
details
CFinderM001147SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Alfin-like Transcription_Regulator(from iTAK)
nucleotidyltransferase activity,
TORC1_complex
mediator complex,
phospholipid metabolic process,
TOR_signaling
phospholipase A2 activity,
lipid catabolic process,
methylation,
Linoleic_acid_metabolism
Arachidonic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
details
CFinderM001602SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
transcription initiation, DNA-dependent,
details
CFinderM001606LIM Transcription_Regulator(from iTAK)
mitochondrial proton-transporting ATP synthase complex, catalytic core F(1),
proton-transporting two-sector ATPase complex, catalytic domain,
proton-transporting ATP synthase complex, catalytic core F(1),
ATP biosynthetic process,
ATP metabolic process,
ATP_catabolic_process
actin cytoskeleton organization,
proton transport,
ATP synthesis coupled proton transport,
ATP hydrolysis coupled proton transport,
Phagosome
Oxidative_phosphorylation
details

4.Expression profilings


Show details about module gene expression profiling