Annotation of co-expression genes

PH01002885G0150's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT1G03910 : 0.00E+00
Blast annotation: -

2.Location

Scaffold: PH01002885
Strand: -

RegionStartEnd
gene8987199511
mRNA8987199511
exon8987190584
exon9066390929
exon9128891461
exon9219392335
exon9241692557
exon9287193155
exon9410894203
exon9519395333
exon9542795489
exon9558195652
exon9630896404
exon9834798438
exon9852499511
CDS9046590584
CDS9066390929
CDS9128891461
CDS9219392335
CDS9241692557
CDS9287193155
CDS9410894203
CDS9519395333
CDS9542795489
CDS9558195652
CDS9630896404
CDS9834798438
CDS9852498547

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000946SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
actin cytoskeleton organization,
transcription initiation, DNA-dependent,
mitochondrial respiratory chain,
sister_chromatid_cohesion
chromosome condensation,
CMGC_MAPK (from iTAK)
actin binding,
chromosome organization,
ribulose-phosphate 3-epimerase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF10312.8Cactin_mid100297
PF09732.8CactinC_cactus447571

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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