PH01000781G0080's details annotation
1.Annotation
ICBR annotation: actin, putative, expressed
Blast result AT3G53750 : 0.00E+00
Blast annotation: actin 3
2.Location
Scaffold: PH01000781
Strand: +
| Region | Start | End |
| gene | 44785 | 47419 |
| mRNA | 44785 | 47419 |
| exon | 44785 | 45086 |
| exon | 45171 | 45564 |
| exon | 46100 | 46713 |
| exon | 46845 | 47419 |
| CDS | 45027 | 45086 |
| CDS | 45171 | 45564 |
| CDS | 46100 | 46713 |
| CDS | 46845 | 46910 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000505 | Phagosome regulation of actin filament polymerization, cytoskeleton, GRAS Transcription_Regulator(from PlantTFDB) Rho GDP-dissociation inhibitor activity, |
| coexpression network | CFinderM000660 | Phagosome mitochondrial inner membrane, GTnc GlycosylTransferases |
| coexpression network | CFinderM000946 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) actin cytoskeleton organization, transcription initiation, DNA-dependent, mitochondrial respiratory chain, sister_chromatid_cohesion chromosome condensation, CMGC_MAPK (from iTAK) actin binding, chromosome organization, ribulose-phosphate 3-epimerase activity, |
| coexpression network | CFinderM001606 | LIM Transcription_Regulator(from iTAK) mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), proton-transporting two-sector ATPase complex, catalytic domain, proton-transporting ATP synthase complex, catalytic core F(1), ATP biosynthetic process, ATP metabolic process, ATP_catabolic_process actin cytoskeleton organization, proton transport, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00022.18 | Actin | 5 | 377 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Phagosome | actin beta/gamma 1 | ko04145 | K05692 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.