PH01001926G0020's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G23090 : 9.20E-32
Blast annotation: Uncharacterised protein family SERF
2.Location
Scaffold: PH01001926
Strand: -
| Region | Start | End |
| gene | 16118 | 18180 |
| mRNA | 16118 | 18180 |
| exon | 16118 | 16819 |
| exon | 17605 | 17645 |
| exon | 17774 | 18180 |
| CDS | 16700 | 16819 |
| CDS | 17605 | 17645 |
| CDS | 17774 | 17846 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000382 | ribulose-phosphate 3-epimerase activity, racemase and epimerase activity, acting on carbohydrates and derivatives, endoplasmic reticulum, pentose-phosphate shunt, |
| coexpression network | CFinderM000946 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) actin cytoskeleton organization, transcription initiation, DNA-dependent, mitochondrial respiratory chain, sister_chromatid_cohesion chromosome condensation, CMGC_MAPK (from iTAK) actin binding, chromosome organization, ribulose-phosphate 3-epimerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04419.13 | 4F5 | 3 | 36 |
| PF12907.6 | zf-met2 | 38 | 75 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.