PH01004889G0040's details annotation 1.Annotation ICBR annotation: plus-3 domain containing protein, expressed
Blast result AT2G16485 : 1.00E-180 Blast annotation: nucleic acid binding;zinc ion binding;DNA binding 2.Location Scaffold: PH01004889 Strand: - Region | Start | End | gene | 31360 | 41926 | mRNA | 31360 | 41926 | exon | 31360 | 32655 | exon | 32838 | 32897 | exon | 33059 | 34240 | exon | 34340 | 34482 | exon | 34805 | 34815 | exon | 34848 | 34898 | exon | 34984 | 35043 | exon | 35184 | 35213 | exon | 35327 | 35454 | exon | 35530 | 36568 | exon | 39294 | 39372 | exon | 39417 | 39481 | exon | 40047 | 40134 | exon | 40229 | 41926 | CDS | 31568 | 32655 | CDS | 32838 | 32897 | CDS | 33059 | 34240 | CDS | 34340 | 34482 | CDS | 34805 | 34815 | CDS | 34848 | 34898 | CDS | 34984 | 35043 | CDS | 35184 | 35213 | CDS | 35327 | 35454 | CDS | 35530 | 36568 | CDS | 39294 | 39372 | CDS | 39417 | 39481 | CDS | 40047 | 40134 | CDS | 40229 | 41859 |
UCSC genome browser 3.Network  4.Functional module Method | Module ID | Function Annotation | coexpression network | CFinderM000946 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) actin cytoskeleton organization, transcription initiation, DNA-dependent, mitochondrial respiratory chain, sister_chromatid_cohesion chromosome condensation, CMGC_MAPK (from iTAK) actin binding, chromosome organization, ribulose-phosphate 3-epimerase activity,
| coexpression network | CFinderM001602 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway transcription initiation, DNA-dependent,
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5.Cis-elements Details in 3kb promoter region 6.Expression profilings
7.Gene family Category | Family | Transcription_Regulator(from iTAK) | SWI/SNF-BAF60b | Transcription_Regulator(from PlantTFDB) | C3H |
8.Protein domain
9.KEGG Pathway Pathway | KEGG Ortholog | Pathway ID | KO | null | null | null | null |
10.Gene Ontology GO Accession | GO Annotation | GO:0003676 | nucleic acid binding | GO:0003677 | DNA binding | GO:0005515 | protein binding | GO:0005634 | nucleus | GO:0006352 | DNA-dependent transcription, initiation | GO:0008270 | zinc ion binding | GO:0016570 | histone modification |
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