PH01000779G0090's details annotation
1.Annotation
ICBR annotation: RNA-binding protein Luc7-like, putative, expressed
Blast result AT5G51410 : 8.20E-98
Blast annotation: LUC7 N_terminus domain-containing protein
2.Location
Scaffold: PH01000779
Strand: +
| Region | Start | End |
| gene | 69851 | 76294 |
| mRNA | 69851 | 76294 |
| exon | 69851 | 71775 |
| exon | 71886 | 72014 |
| exon | 72114 | 72153 |
| exon | 72195 | 72244 |
| exon | 73281 | 73326 |
| exon | 74931 | 75006 |
| exon | 75074 | 75268 |
| exon | 75369 | 75578 |
| exon | 75655 | 76294 |
| CDS | 71733 | 71775 |
| CDS | 71886 | 72014 |
| CDS | 72114 | 72153 |
| CDS | 72195 | 72244 |
| CDS | 73281 | 73326 |
| CDS | 74931 | 75006 |
| CDS | 75074 | 75268 |
| CDS | 75369 | 75578 |
| CDS | 75655 | 76026 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000946 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) actin cytoskeleton organization, transcription initiation, DNA-dependent, mitochondrial respiratory chain, sister_chromatid_cohesion chromosome condensation, CMGC_MAPK (from iTAK) actin binding, chromosome organization, ribulose-phosphate 3-epimerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03194.14 | LUC7 | 2 | 74 |
| PF03194.14 | LUC7 | 102 | 279 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.