PH01001631G0340's details annotation
1.Annotation
ICBR annotation: CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Blast result AT2G43790 : 3.00E-108
Blast annotation: MAP kinase 6
2.Location
Scaffold: PH01001631
Strand: +
| Region | Start | End |
| gene | 200697 | 209513 |
| mRNA | 200697 | 209513 |
| exon | 200697 | 201047 |
| exon | 201124 | 201253 |
| exon | 204444 | 204581 |
| exon | 205072 | 205340 |
| exon | 205463 | 205603 |
| exon | 205881 | 205934 |
| exon | 206874 | 206961 |
| exon | 207255 | 207587 |
| exon | 208419 | 208599 |
| exon | 209249 | 209513 |
| CDS | 200836 | 201047 |
| CDS | 201124 | 201253 |
| CDS | 204444 | 204581 |
| CDS | 205072 | 205340 |
| CDS | 205463 | 205603 |
| CDS | 205881 | 205934 |
| CDS | 206874 | 206961 |
| CDS | 207255 | 207587 |
| CDS | 208419 | 208599 |
| CDS | 209249 | 209418 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000946 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) actin cytoskeleton organization, transcription initiation, DNA-dependent, mitochondrial respiratory chain, sister_chromatid_cohesion chromosome condensation, CMGC_MAPK (from iTAK) actin binding, chromosome organization, ribulose-phosphate 3-epimerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 62 | 160 |
| PF00069.24 | Pkinase | 346 | 525 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.