PH01001214G0520's details annotation
1.Annotation
ICBR annotation: SART-1 family protein, putative, expressed
Blast result AT5G16780 : 9.00E-162
Blast annotation: SART-1 family
2.Location
Scaffold: PH01001214
Strand: -
| Region | Start | End |
| gene | 348051 | 358434 |
| mRNA | 348051 | 358434 |
| exon | 348051 | 349841 |
| exon | 350107 | 350188 |
| exon | 350840 | 351060 |
| exon | 351359 | 351714 |
| exon | 351821 | 352430 |
| exon | 352559 | 352618 |
| exon | 352697 | 352763 |
| exon | 352847 | 352940 |
| exon | 353011 | 353124 |
| exon | 353293 | 353356 |
| exon | 353455 | 353620 |
| exon | 354601 | 358434 |
| CDS | 349761 | 349841 |
| CDS | 350107 | 350188 |
| CDS | 350840 | 351060 |
| CDS | 351359 | 351714 |
| CDS | 351821 | 352430 |
| CDS | 352559 | 352618 |
| CDS | 352697 | 352763 |
| CDS | 352847 | 352940 |
| CDS | 353011 | 353124 |
| CDS | 353293 | 353356 |
| CDS | 353455 | 353620 |
| CDS | 354601 | 355196 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000946 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) actin cytoskeleton organization, transcription initiation, DNA-dependent, mitochondrial respiratory chain, sister_chromatid_cohesion chromosome condensation, CMGC_MAPK (from iTAK) actin binding, chromosome organization, ribulose-phosphate 3-epimerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03343.12 | SART-1 | 162 | 679 |
| PF03343.12 | SART-1 | 697 | 743 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | U4/U6.U5 tri-snRNP-associated protein 1 | ko03041 | K11984 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.