PH01000541G0730's details annotation
1.Annotation
ICBR annotation: ADP-ribosylation factor, putative, expressed
Blast result AT2G47170 : 2.00E-100
Blast annotation: Ras-related small GTP-binding family protein
2.Location
Scaffold: PH01000541
Strand: +
| Region | Start | End |
| gene | 475704 | 481364 |
| mRNA | 475704 | 481364 |
| exon | 475704 | 476406 |
| exon | 477212 | 477282 |
| exon | 477478 | 477597 |
| exon | 478054 | 478172 |
| exon | 478785 | 478866 |
| exon | 479641 | 481364 |
| CDS | 476259 | 476406 |
| CDS | 477212 | 477282 |
| CDS | 477478 | 477597 |
| CDS | 478054 | 478172 |
| CDS | 478785 | 478866 |
| CDS | 479641 | 480192 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000343 | |
| coexpression network | CFinderM000534 | CMGC_GSK (from iTAK) transcription factor TFIID complex, intracellular, Basal_transcription_factors Phagosome |
| coexpression network | CFinderM000946 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) actin cytoskeleton organization, transcription initiation, DNA-dependent, mitochondrial respiratory chain, sister_chromatid_cohesion chromosome condensation, CMGC_MAPK (from iTAK) actin binding, chromosome organization, ribulose-phosphate 3-epimerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00025.20 | Arf | 7 | 177 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0006886 | intracellular protein transport |
| GO:0007264 | small GTPase mediated signal transduction |
| GO:0015031 | protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.