PH01003943G0040's details annotation
1.Annotation
ICBR annotation: ribulose-phosphate 3-epimerase, putative, expressed
Blast result AT1G63290 : 2.70E-93
Blast annotation: Aldolase-type TIM barrel family protein
2.Location
Scaffold: PH01003943
Strand: +
| Region | Start | End |
| gene | 9452 | 14210 |
| mRNA | 9452 | 14210 |
| exon | 9452 | 10986 |
| exon | 11621 | 11625 |
| exon | 12516 | 12578 |
| exon | 12667 | 12949 |
| exon | 13620 | 13712 |
| exon | 13802 | 13843 |
| exon | 13958 | 14210 |
| CDS | 10867 | 10986 |
| CDS | 11621 | 11625 |
| CDS | 12516 | 12578 |
| CDS | 12667 | 12949 |
| CDS | 13620 | 13712 |
| CDS | 13802 | 13843 |
| CDS | 13958 | 14113 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000382 | ribulose-phosphate 3-epimerase activity, racemase and epimerase activity, acting on carbohydrates and derivatives, endoplasmic reticulum, pentose-phosphate shunt, |
| coexpression network | CFinderM000946 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) actin cytoskeleton organization, transcription initiation, DNA-dependent, mitochondrial respiratory chain, sister_chromatid_cohesion chromosome condensation, CMGC_MAPK (from iTAK) actin binding, chromosome organization, ribulose-phosphate 3-epimerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00834.18 | Ribul_P_3_epim | 7 | 199 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pentose phosphate pathway | ribulose-phosphate 3-epimerase [EC:5.1.3.1] | ko00030 | K01783 |
| Pentose and glucuronate interconversions | ribulose-phosphate 3-epimerase [EC:5.1.3.1] | ko00040 | K01783 |
| Carbon fixation in photosynthetic organisms | ribulose-phosphate 3-epimerase [EC:5.1.3.1] | ko00710 | K01783 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004750 | ribulose-phosphate 3-epimerase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006098 | pentose-phosphate shunt |
| GO:0008152 | metabolic process |
| GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.