PH01000818G0250's details annotation
1.Annotation
ICBR annotation: profilin domain containing protein, expressed
Blast result AT2G19760 : 1.50E-56
Blast annotation: profilin 1
2.Location
Scaffold: PH01000818
Strand: -
| Region | Start | End |
| gene | 253298 | 257261 |
| mRNA | 253298 | 257261 |
| exon | 253298 | 255179 |
| exon | 255934 | 256071 |
| exon | 257053 | 257261 |
| CDS | 255045 | 255179 |
| CDS | 255934 | 256071 |
| CDS | 257053 | 257175 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000946 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) actin cytoskeleton organization, transcription initiation, DNA-dependent, mitochondrial respiratory chain, sister_chromatid_cohesion chromosome condensation, CMGC_MAPK (from iTAK) actin binding, chromosome organization, ribulose-phosphate 3-epimerase activity, |
| coexpression network | CFinderM001606 | LIM Transcription_Regulator(from iTAK) mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), proton-transporting two-sector ATPase complex, catalytic domain, proton-transporting ATP synthase complex, catalytic core F(1), ATP biosynthetic process, ATP metabolic process, ATP_catabolic_process actin cytoskeleton organization, proton transport, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00235.18 | Profilin | 1 | 130 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003779 | actin binding |
| GO:0030036 | actin cytoskeleton organization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.