Annotation of co-expression genes

PH01000061G0380's details annotation

1.Annotation

ICBR annotation: peptidase, T1 family, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01000061
Strand: +

RegionStartEnd
gene229808231584
mRNA229808231584
exon229808230094
exon231205231584
CDS229891230094
CDS231205231288

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001353TKL-Pl-7 (from iTAK)
Others Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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