PH01000062G0580's details annotation
1.Annotation
ICBR annotation: DEAD-box ATP-dependent RNA helicase, putative, expressed
Blast result AT2G01440 : 0.00E+00
Blast annotation: DEAD/DEAH box RNA helicase family protein
2.Location
Scaffold: PH01000062
Strand: +
| Region | Start | End |
| gene | 360409 | 369509 |
| mRNA | 360409 | 369509 |
| exon | 360409 | 361595 |
| exon | 361721 | 361838 |
| exon | 362424 | 362939 |
| exon | 363024 | 363136 |
| exon | 363865 | 364099 |
| exon | 364391 | 364554 |
| exon | 364963 | 365044 |
| exon | 365449 | 365538 |
| exon | 365997 | 366230 |
| exon | 366605 | 366676 |
| exon | 366881 | 366904 |
| exon | 367115 | 367258 |
| exon | 367845 | 368003 |
| exon | 368299 | 368382 |
| exon | 368514 | 369086 |
| exon | 369164 | 369509 |
| CDS | 361591 | 361595 |
| CDS | 361721 | 361838 |
| CDS | 362424 | 362939 |
| CDS | 363024 | 363136 |
| CDS | 363865 | 364099 |
| CDS | 364391 | 364554 |
| CDS | 364963 | 365044 |
| CDS | 365449 | 365538 |
| CDS | 365997 | 366230 |
| CDS | 366605 | 366676 |
| CDS | 366881 | 366904 |
| CDS | 367115 | 367258 |
| CDS | 367845 | 368003 |
| CDS | 368299 | 368382 |
| CDS | 368514 | 369086 |
| CDS | 369164 | 369256 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001336 | Golgi-associated vesicle, membrane coat, COPI vesicle coat, Homologous_recombination Terpenoid_backbone_biosynthesis isoprenoid biosynthetic process, binding, |
| coexpression network | CFinderM001566 | DBP Transcription_Regulator(from iTAK) helicase activity, ATP-dependent 3'-5' DNA helicase activity, Homologous_recombination DNA recombination, iron-sulfur cluster assembly, protein dephosphorylation, DNA repair, DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00271.30 | Helicase_C | 688 | 795 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Homologous recombination | ATP-dependent DNA helicase RecG [EC:3.6.4.12] | ko03440 | K03655 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.