PH01000064G0630's details annotation
1.Annotation
ICBR annotation: calmodulin-binding transcription activator, putative, expressed
Blast result AT2G22300 : 1.80E-70
Blast annotation: signal responsive 1
2.Location
Scaffold: PH01000064
Strand: +
| Region | Start | End |
| gene | 381085 | 387992 |
| mRNA | 381085 | 387992 |
| exon | 381085 | 381295 |
| exon | 381736 | 381851 |
| exon | 382511 | 382599 |
| exon | 382745 | 382787 |
| exon | 383239 | 383422 |
| exon | 383731 | 384068 |
| exon | 384836 | 385174 |
| exon | 385334 | 385379 |
| exon | 385585 | 386108 |
| exon | 386772 | 387074 |
| exon | 387275 | 387992 |
| CDS | 381271 | 381295 |
| CDS | 381736 | 381851 |
| CDS | 382511 | 382599 |
| CDS | 382745 | 382787 |
| CDS | 383239 | 383422 |
| CDS | 383731 | 384068 |
| CDS | 384836 | 385174 |
| CDS | 385334 | 385379 |
| CDS | 385585 | 386108 |
| CDS | 386772 | 387074 |
| CDS | 387275 | 387388 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000237 | solute:hydrogen antiporter activity, |
| coexpression network | CFinderM001247 | CAMTA Transcription_Regulator(from PlantTFDB) superoxide metabolic process, Peroxisome Protein_export superoxide dismutase activity, |
| coexpression network | CFinderM001320 | CMGC_CDK-PITSLRE (from iTAK) CAMTA Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001460 | nucleus, CAMTA Transcription_Regulator(from PlantTFDB) Nitrogen_metabolism Oxidative_phosphorylation bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | CAMTA |
| Transcription_Regulator(from PlantTFDB) | CAMTA |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03859.15 | CG-1 | 10 | 89 |
| PF00612.26 | IQ | 538 | 557 |
| PF00612.26 | IQ | 562 | 581 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.