PH01000065G2010's details annotation
1.Annotation
ICBR annotation: helix-loop-helix DNA-binding domain containing protein, expressed
Blast result AT5G39860 : 3.10E-19
Blast annotation: basic helix-loop-helix (bHLH) DNA-binding family protein
2.Location
Scaffold: PH01000065
Strand: -
| Region | Start | End |
| gene | 1262854 | 1263600 |
| mRNA | 1262854 | 1263600 |
| exon | 1262854 | 1263215 |
| exon | 1263385 | 1263600 |
| CDS | 1263063 | 1263215 |
| CDS | 1263385 | 1263492 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000103 | plant-type cell wall organization, extracellular region, microtubule-based movement, microtubule associated complex, |
| coexpression network | CFinderM000342 | ERF Transcription_Regulator(from PlantTFDB) AP2/ERF-ERF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bHLH |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00010.25 | HLH | 14 | 53 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.