|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | ERF Transcription_Regulator(from PlantTFDB) | 0.000697835 | GFam | | AP2/ERF-ERF Transcription_Regulator(from iTAK) | 0.000697835 | GFam |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000002 | extracellular region,
plant-type cell wall organization,
sexual reproduction,
glycerol metabolic process,
| details | | CFinderM000013 | cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
response to oxidative stress,
extracellular polysaccharide biosynthetic process,
hydrolase activity, hydrolyzing O-glycosyl compounds,
carbohydrate metabolic process,
| details | | CFinderM000051 | Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
protein neddylation,
steroid biosynthetic process,
Flavonoid_biosynthesis
cellular protein modification process,
transferase activity, transferring acyl groups other than amino-acyl groups,
small protein activating enzyme activity,
3-beta-hydroxy-delta5-steroid dehydrogenase activity,
| details | | CFinderM000052 | protein neddylation,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
calcium-dependent phospholipid binding,
| details | | CFinderM000103 | plant-type cell wall organization,
extracellular region,
microtubule-based movement,
microtubule associated complex,
| details | | CFinderM000157 | RNA_transport
mRNA_surveillance_pathway
| details | | CFinderM000161 | Methane_metabolism
Phenylalanine_metabolism
Phenylpropanoid_biosynthesis
response to oxidative stress,
peroxidase activity,
heme binding,
cellulose biosynthetic process,
| details | | CFinderM000209 | proton-transporting ATP synthase complex, coupling factor F(o),
proton-transporting two-sector ATPase complex, proton-transporting domain,
protein neddylation,
Trihelix Transcription_Regulator(from PlantTFDB)
cellular protein modification process,
ATP hydrolysis coupled proton transport,
ATP synthesis coupled proton transport,
apoplast,
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
nutrient reservoir activity,
hydrogen ion transmembrane transporter activity,
manganese ion binding,
serine-type peptidase activity,
| details | | CFinderM000258 | cellular protein modification process,
protein neddylation,
phosphopyruvate hydratase complex,
NF-YB Transcription_Regulator(from PlantTFDB)
PLATZ Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-VI-2 (from iTAK)
| details | | CFinderM000378 | extracellular region,
sexual reproduction,
RNA_transport
mRNA_surveillance_pathway
| details | | CFinderM000386 | C2H2 Transcription_Regulator(from PlantTFDB)
GH18 Glycoside_Hydrolases
protein neddylation,
Tify Transcription_Regulator(from iTAK)
| details | | CFinderM000398 | protein neddylation,
exocyst,
apoplast,
cellular protein modification process,
exocytosis,
Ubiquitin_mediated_proteolysis
cysteine-type endopeptidase activity,
small protein activating enzyme activity,
| details | | CFinderM000450 | C2C2-Dof Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
RLK-Pelle_L-LEC (from iTAK)
| details | | CFinderM000451 | protein neddylation,
Trihelix Transcription_Regulator(from PlantTFDB)
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
cellular protein modification process,
| details | | CFinderM000452 | protein neddylation,
Trihelix Transcription_Regulator(from PlantTFDB)
cellular protein modification process,
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
calcium-dependent phospholipid binding,
| details | | CFinderM000469 | CCAAT-binding factor complex,
NF-YA Transcription_Regulator(from PlantTFDB)
response to biotic stimulus,
| details | | CFinderM000528 | RLK-Pelle_RLCK-XIII (from iTAK)
base-excision repair,
Base_excision_repair
DNA-3-methyladenine glycosylase activity,
| details | | CFinderM000529 | RLK-Pelle_Extensin (from iTAK)
RLK-Pelle_RLCK-XIII (from iTAK)
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000654 | protein neddylation,
RLK-Pelle_CR4L (from iTAK)
cellular protein modification process,
Ubiquitin_mediated_proteolysis
| details | | CFinderM000663 | protein neddylation,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
chromosome,
DNA topological change,
DNA metabolic process,
apoplast,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
DNA topoisomerase (ATP-hydrolyzing) activity,
| details | | CFinderM000689 | hydrolase activity, acting on ester bonds,
lipid metabolic process,
hydrolase activity,
RLK-Pelle_Extensin (from iTAK)
lipase activity,
lipid transport,
| details | | CFinderM000742 | protein neddylation,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
Cysteine_and_methionine_metabolism
Tify Transcription_Regulator(from iTAK)
| details | | CFinderM000903 | protein neddylation,
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Ubiquitin_mediated_proteolysis
cellular protein modification process,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001022 | IWS1 Transcription_Regulator(from iTAK)
protein neddylation,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
transcription, DNA-dependent,
small protein activating enzyme activity,
| details | | CFinderM001110 | Ubiquitin_mediated_proteolysis
acid-amino acid ligase activity,
protein neddylation,
cellular protein modification process,
small protein activating enzyme activity,
| details | | CFinderM001412 | protein neddylation,
PLATZ Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-VI-2 (from iTAK)
cellular protein modification process,
Ubiquitin_mediated_proteolysis
RNA_degradation
small protein activating enzyme activity,
| details | | CFinderM001413 | protein neddylation,
IWS1 Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-VI-2 (from iTAK)
C2C2-Dof Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
Ubiquitin_mediated_proteolysis
cellular protein modification process,
small protein activating enzyme activity,
| details | | CFinderM001601 | GH35 Glycoside_Hydrolases
| details | | CFinderM001609 | RNA_transport
mRNA_surveillance_pathway
| details |
4.Expression profilings |
