PH01000478G0180's details annotation
1.Annotation
ICBR annotation: laccase precursor protein, putative, expressed
Blast result AT5G60020 : 0
Blast annotation: laccase 17
2.Location
Scaffold: PH01000478
Strand: +
| Region | Start | End |
| gene | 96477 | 99070 |
| mRNA | 96477 | 99070 |
| exon | 96477 | 96714 |
| exon | 96850 | 97001 |
| exon | 97110 | 97483 |
| exon | 97588 | 98422 |
| exon | 98704 | 99070 |
| CDS | 96613 | 96714 |
| CDS | 96850 | 97001 |
| CDS | 97110 | 97483 |
| CDS | 97588 | 98422 |
| CDS | 98704 | 98791 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000342 | ERF Transcription_Regulator(from PlantTFDB) AP2/ERF-ERF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07732.14 | Cu-oxidase_3 | 35 | 148 |
| PF00394.21 | Cu-oxidase | 161 | 312 |
| PF07731.13 | Cu-oxidase_2 | 436 | 488 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0046274 | lignin catabolic process |
| GO:0048046 | apoplast |
| GO:0052716 | hydroquinone:oxygen oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.