CFinderM000002's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
extracellular region,2.11E-13GO:0005576
plant-type cell wall organization,6.29E-07GO:0009664
sexual reproduction,6.29E-07GO:0019953
glycerol metabolic process,0.036770552GO:0006071

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000009G2460expansin A8AT2G40610 (1.00E-105)
PH01000016G0320PLC-like phosphodiesterases superfamily proteinAT5G41080 (1.00E-114)
PH01000346G0830Protein of unknown function, DUF642AT5G11420 (1.80E-79)
PH01000561G0620Smg-4/UPF3 family proteinAT1G33980 (1.30E-76)
PH01000761G0570Peroxidase superfamily proteinAT2G39040 (8.20E-80)
PH01000872G0310Glycosyl hydrolase superfamily proteinAT5G66460 (8.50E-68)
PH01000995G0300expansin B4AT2G45110 (2.50E-61)
PH01001155G0300expansin B2AT1G65680 (1.30E-60)
PH01001155G0360expansin B2AT1G65680 (2.10E-54)
PH01001280G0510expansin A2AT5G05290 (2.00E-105)
PH01002238G0310expansin A1AT1G69530 (6.00E-97)
PH01002356G0150Glycosyl hydrolase superfamily proteinAT5G66460 (2.30E-59)
PH01005690G0040Protein of unknown function, DUF642AT4G32460 (1.30E-56)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000013cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
response to oxidative stress,
extracellular polysaccharide biosynthetic process,
hydrolase activity, hydrolyzing O-glycosyl compounds,
carbohydrate metabolic process,
details
CFinderM000103plant-type cell wall organization,
extracellular region,
microtubule-based movement,
microtubule associated complex,
details
CFinderM000157RNA_transport
mRNA_surveillance_pathway
details
CFinderM000161Methane_metabolism
Phenylalanine_metabolism
Phenylpropanoid_biosynthesis
response to oxidative stress,
peroxidase activity,
heme binding,
cellulose biosynthetic process,
details
CFinderM000342ERF Transcription_Regulator(from PlantTFDB)
AP2/ERF-ERF Transcription_Regulator(from iTAK)
details
CFinderM000378extracellular region,
sexual reproduction,
RNA_transport
mRNA_surveillance_pathway
details
CFinderM000469CCAAT-binding factor complex,
NF-YA Transcription_Regulator(from PlantTFDB)
response to biotic stimulus,
details
CFinderM000528RLK-Pelle_RLCK-XIII (from iTAK)
base-excision repair,
Base_excision_repair
DNA-3-methyladenine glycosylase activity,
details
CFinderM000529RLK-Pelle_Extensin (from iTAK)
RLK-Pelle_RLCK-XIII (from iTAK)
details
CFinderM000689hydrolase activity, acting on ester bonds,
lipid metabolic process,
hydrolase activity,
RLK-Pelle_Extensin (from iTAK)
lipase activity,
lipid transport,
details
CFinderM001601GH35 Glycoside_Hydrolases
details
CFinderM001609RNA_transport
mRNA_surveillance_pathway
details

4.Expression profilings


Show details about module gene expression profiling