PH01005690G0040's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G32460 : 1.30E-56
Blast annotation: Protein of unknown function, DUF642
2.Location
Scaffold: PH01005690
Strand: -
| Region | Start | End |
| gene | 24333 | 28752 |
| mRNA | 24333 | 28752 |
| exon | 24333 | 25287 |
| exon | 25382 | 25567 |
| exon | 26068 | 26132 |
| exon | 28608 | 28752 |
| CDS | 24916 | 25287 |
| CDS | 25382 | 25567 |
| CDS | 26068 | 26132 |
| CDS | 28608 | 28674 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000002 | extracellular region, plant-type cell wall organization, sexual reproduction, glycerol metabolic process, |
| coexpression network | CFinderM000103 | plant-type cell wall organization, extracellular region, microtubule-based movement, microtubule associated complex, |
| coexpression network | CFinderM000342 | ERF Transcription_Regulator(from PlantTFDB) AP2/ERF-ERF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04862.11 | DUF642 | 45 | 75 |
| PF04862.11 | DUF642 | 106 | 212 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.