CFinderM000161's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Methane_metabolism0.001864285KEGG
Phenylalanine_metabolism0.001864285KEGG
Phenylpropanoid_biosynthesis0.001864285KEGG
response to oxidative stress,0.004532561GO:0006979
peroxidase activity,0.01228782GO:0004601
heme binding,0.038488677GO:0020037
cellulose biosynthetic process,0.047758885GO:0030244

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000052G0290-- (-)
PH01000069G1880Peroxidase superfamily proteinAT1G05260 (9.00E-107)
PH01000294G0110Peroxidase superfamily proteinAT5G05340 (1.60E-54)
PH01000561G0620Smg-4/UPF3 family proteinAT1G33980 (1.30E-76)
PH01000933G0620Glycosyltransferase family 61 proteinAT3G18180 (3.20E-36)
PH01001299G0200-- (-)
PH01001775G0330Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein familyAT5G22200 (5.40E-36)
PH01002336G0170HXXXD-type acyl-transferase family proteinAT3G62160 (3.10E-37)
PH01002451G0260Pollen Ole e 1 allergen and extensin family proteinAT5G13140 (6.70E-25)
PH01002576G0110cellulose-synthase like D2AT5G16910 (0)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000002extracellular region,
plant-type cell wall organization,
sexual reproduction,
glycerol metabolic process,
details
CFinderM000013cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
response to oxidative stress,
extracellular polysaccharide biosynthetic process,
hydrolase activity, hydrolyzing O-glycosyl compounds,
carbohydrate metabolic process,
details
CFinderM000103plant-type cell wall organization,
extracellular region,
microtubule-based movement,
microtubule associated complex,
details
CFinderM000157RNA_transport
mRNA_surveillance_pathway
details
CFinderM000232Citrate_cycle_(TCA_cycle)
apoplast,
cell wall,
cellular glucan metabolic process,
details
CFinderM000342ERF Transcription_Regulator(from PlantTFDB)
AP2/ERF-ERF Transcription_Regulator(from iTAK)
details
CFinderM000367cellulose synthase (UDP-forming) activity,
response to stress,
cellulose biosynthetic process,
details
CFinderM000378extracellular region,
sexual reproduction,
RNA_transport
mRNA_surveillance_pathway
details
CFinderM000469CCAAT-binding factor complex,
NF-YA Transcription_Regulator(from PlantTFDB)
response to biotic stimulus,
details
CFinderM000512GH35 Glycoside_Hydrolases
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details
CFinderM000528RLK-Pelle_RLCK-XIII (from iTAK)
base-excision repair,
Base_excision_repair
DNA-3-methyladenine glycosylase activity,
details
CFinderM000529RLK-Pelle_Extensin (from iTAK)
RLK-Pelle_RLCK-XIII (from iTAK)
details
CFinderM000689hydrolase activity, acting on ester bonds,
lipid metabolic process,
hydrolase activity,
RLK-Pelle_Extensin (from iTAK)
lipase activity,
lipid transport,
details
CFinderM001339chitin catabolic process,
chitinase activity,
cell wall macromolecule catabolic process,
GH19 Glycoside_Hydrolases
details
CFinderM001601GH35 Glycoside_Hydrolases
details
CFinderM001609RNA_transport
mRNA_surveillance_pathway
details

4.Expression profilings


Show details about module gene expression profiling