PH01000933G0620's details annotation
1.Annotation
ICBR annotation: glycosyltransferase, putative, expressed
Blast result AT3G18180 : 3.20E-36
Blast annotation: Glycosyltransferase family 61 protein
2.Location
Scaffold: PH01000933
Strand: +
| Region | Start | End |
| gene | 412907 | 414907 |
| mRNA | 412907 | 414907 |
| exon | 412907 | 413117 |
| exon | 413216 | 413441 |
| exon | 413687 | 413816 |
| exon | 414029 | 414907 |
| CDS | 412994 | 413117 |
| CDS | 413216 | 413441 |
| CDS | 413687 | 413816 |
| CDS | 414029 | 414511 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000161 | Methane_metabolism Phenylalanine_metabolism Phenylpropanoid_biosynthesis response to oxidative stress, peroxidase activity, heme binding, cellulose biosynthetic process, |
| coexpression network | CFinderM000512 | GH35 Glycoside_Hydrolases MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001339 | chitin catabolic process, chitinase activity, cell wall macromolecule catabolic process, GH19 Glycoside_Hydrolases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04577.13 | DUF563 | 120 | 233 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.