Annotation of co-expression genes

PH01000761G0570's details annotation

1.Annotation

ICBR annotation: peroxidase precursor, putative, expressed

Blast result AT2G39040 : 8.20E-80
Blast annotation: Peroxidase superfamily protein

2.Location

Scaffold: PH01000761
Strand: +

RegionStartEnd
gene436927441508
mRNA436927441508
exon436927437240
exon437433437787
exon439439439513
exon440495440619
exon440731441508
CDS437013437240
CDS437433437787
CDS439439439513
CDS440495440619
CDS440731441033

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000002extracellular region,
plant-type cell wall organization,
sexual reproduction,
glycerol metabolic process,
coexpression networkCFinderM000342ERF Transcription_Regulator(from PlantTFDB)
AP2/ERF-ERF Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00141.22peroxidase51322

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phenylalanine metabolismperoxidase [EC:1.11.1.7]ko00360K00430
Phenylpropanoid biosynthesisperoxidase [EC:1.11.1.7]ko00940K00430
Methane metabolismperoxidase [EC:1.11.1.7]ko00680K00430

10.Gene Ontology

GO AccessionGO Annotation
GO:0004601peroxidase activity
GO:0006979response to oxidative stress
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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