PH01001453G0450's details annotation
1.Annotation
ICBR annotation: 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
Blast result AT3G14440 : 6.00E-110
Blast annotation: nine-cis-epoxycarotenoid dioxygenase 3
2.Location
Scaffold: PH01001453
Strand: -
| Region | Start | End |
| gene | 327849 | 331287 |
| mRNA | 327849 | 331287 |
| exon | 327849 | 329690 |
| exon | 330025 | 331287 |
| CDS | 329346 | 329690 |
| CDS | 330025 | 330837 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000342 | ERF Transcription_Regulator(from PlantTFDB) AP2/ERF-ERF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03055.14 | RPE65 | 36 | 272 |
| PF03055.14 | RPE65 | 270 | 376 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.