PH01000066G0670's details annotation
1.Annotation
ICBR annotation: Sad1 / UNC-like C-terminal domain containing protein, putative, expressed
Blast result AT1G71360 : 6.00E-105
Blast annotation: Galactose-binding protein
2.Location
Scaffold: PH01000066
Strand: +
| Region | Start | End |
| gene | 470332 | 474173 |
| mRNA | 470332 | 474173 |
| exon | 470332 | 471428 |
| exon | 471760 | 473057 |
| exon | 473142 | 473227 |
| exon | 473445 | 473607 |
| exon | 473862 | 474173 |
| CDS | 471251 | 471428 |
| CDS | 471760 | 473057 |
| CDS | 473142 | 473227 |
| CDS | 473445 | 473607 |
| CDS | 473862 | 474047 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000740 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis CAMK_CAMKL-CHK1 (from iTAK) shikimate 3-dehydrogenase (NADP+) activity, 3-dehydroquinate dehydratase activity, intracellular protein transport, membrane coat, clathrin adaptor complex, COPII vesicle coat, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07738.12 | Sad1_UNC | 219 | 341 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.