PH01000068G0080's details annotation
1.Annotation
ICBR annotation: ATP12 ATPase, putative, expressed
Blast result AT5G40660 : 4.80E-95
Blast annotation: ATP12 protein-related
2.Location
Scaffold: PH01000068
Strand: +
| Region | Start | End |
| gene | 39941 | 42493 |
| mRNA | 39941 | 42493 |
| exon | 39941 | 40386 |
| exon | 41267 | 41441 |
| exon | 41600 | 41877 |
| exon | 41956 | 42493 |
| CDS | 40009 | 40386 |
| CDS | 41267 | 41441 |
| CDS | 41600 | 41877 |
| CDS | 41956 | 42063 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000262 | Ribosome translation, structural constituent of ribosome, proton-transporting ATP synthase complex assembly, intracellular, signal peptidase complex, signal peptide processing, mRNA processing, Ribosome peptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07542.10 | ATP12 | 74 | 199 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0043461 | proton-transporting ATP synthase complex assembly |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.