PH01000068G0150's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G05140 : 1.10E-44
Blast annotation: Transcription elongation factor (TFIIS) family protein
2.Location
Scaffold: PH01000068
Strand: +
| Region | Start | End |
| gene | 91924 | 95516 |
| mRNA | 91924 | 95516 |
| exon | 91924 | 93209 |
| exon | 93309 | 93377 |
| exon | 93469 | 93551 |
| exon | 93665 | 93720 |
| exon | 93832 | 93953 |
| exon | 94052 | 94097 |
| exon | 94183 | 94475 |
| exon | 94565 | 94682 |
| exon | 94872 | 95516 |
| CDS | 92823 | 93209 |
| CDS | 93309 | 93377 |
| CDS | 93469 | 93551 |
| CDS | 93665 | 93720 |
| CDS | 93832 | 93953 |
| CDS | 94052 | 94097 |
| CDS | 94183 | 94475 |
| CDS | 94565 | 94682 |
| CDS | 94872 | 95002 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000904 | IWS1 Transcription_Regulator(from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) Steroid_biosynthesis GPI anchor metabolic process, |
| coexpression network | CFinderM001022 | IWS1 Transcription_Regulator(from iTAK) protein neddylation, cellular protein modification process, Ubiquitin_mediated_proteolysis transcription, DNA-dependent, small protein activating enzyme activity, |
| coexpression network | CFinderM001413 | protein neddylation, IWS1 Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VI-2 (from iTAK) C2C2-Dof Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) Ubiquitin_mediated_proteolysis cellular protein modification process, small protein activating enzyme activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | IWS1 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08711.10 | Med26 | 137 | 186 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006351 | transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.