Annotation of co-expression genes

PH01000068G1660's details annotation

1.Annotation

ICBR annotation: GTP-binding protein, putative, expressed

Blast result AT4G39520 : 0.00E+00
Blast annotation: GTP-binding protein-related

2.Location

Scaffold: PH01000068
Strand: -

RegionStartEnd
gene11508801157811
mRNA11508801157811
exon11508801151844
exon11519181151969
exon11520541152245
exon11523391152638
exon11531111153220
exon11543101154369
exon11544651154536
exon11548671155040
exon11557521155850
exon11558821155935
exon11569391157811
CDS11517941151844
CDS11519181151969
CDS11520541152245
CDS11523391152638
CDS11531111153220
CDS11543101154369
CDS11544651154536
CDS11548671155040
CDS11557521155850
CDS11558821155935
CDS11569391156980

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000389protein folding,
response to heat,
unfolded protein binding,
coexpression networkCFinderM000426nucleus,
coexpression networkCFinderM000555

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01926.22MMR_HSR199199
PF16897.4MMR_HSR1_Xtn219324
PF02824.20TGS325399

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005525GTP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.