PH01000069G1060's details annotation
1.Annotation
ICBR annotation: methyltransferase, putative, expressed
Blast result AT5G14430 : 0.00E+00
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000069
Strand: +
| Region | Start | End |
| gene | 767762 | 772591 |
| mRNA | 767762 | 772591 |
| exon | 767762 | 768568 |
| exon | 768656 | 768820 |
| exon | 768944 | 769126 |
| exon | 769211 | 769805 |
| exon | 770709 | 770821 |
| exon | 770910 | 771130 |
| exon | 771948 | 772591 |
| CDS | 768347 | 768568 |
| CDS | 768656 | 768820 |
| CDS | 768944 | 769126 |
| CDS | 769211 | 769805 |
| CDS | 770709 | 770821 |
| CDS | 770910 | 771130 |
| CDS | 771948 | 772266 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000207 | anion transport, GT8 GlycosylTransferases RLK-Pelle_LRR-XI-1 (from iTAK) inorganic anion exchanger activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03141.15 | Methyltransf_29 | 82 | 579 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.