Annotation of co-expression genes

PH01000070G1270's details annotation

1.Annotation

ICBR annotation: pumilio domain-containing protein PPD1, putative, expressed

Blast result AT3G20250 : 3.00E-178
Blast annotation: pumilio 5

2.Location

Scaffold: PH01000070
Strand: -

RegionStartEnd
gene767647775856
mRNA767647775856
exon767647768334
exon770117770217
exon770350770521
exon770886771080
exon771539771649
exon771725771937
exon772169772285
exon772462772603
exon772700774114
exon774699775856
CDS768125768334
CDS770117770217
CDS770350770521
CDS770886771080
CDS771539771649
CDS771725771937
CDS772169772285
CDS772462772603
CDS772700774114
CDS774699775340

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000043C3H Transcription_Regulator(from PlantTFDB)
DNA repair,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00806.18PUF678707
PF00806.18PUF714747
PF00806.18PUF753782
PF00806.18PUF789813
PF00806.18PUF825851
PF00806.18PUF862894
PF00806.18PUF898930
PF00806.18PUF942972

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0005488binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.