CFinderM000043's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
C3H Transcription_Regulator(from PlantTFDB)0.017863594GFam
DNA repair,0.026201672GO:0006281

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000019G1450ATP-dependent helicase family proteinAT1G08060 (3.90E-54)
PH01000070G1270pumilio 5AT3G20250 (3.00E-178)
PH01000151G1110-- (-)
PH01000268G1110NAD(P)-binding Rossmann-fold superfamily proteinAT5G37530 (1.50E-36)
PH01000312G0430Protein of unknown function, DUF593AT1G08800 (1.50E-31)
PH01000970G0100pumilio 5AT3G20250 (5.00E-165)
PH01001219G0420photolyase/blue-light receptor 2AT2G47590 (8.00E-113)
PH01001634G0410CwfJ-like family protein / zinc finger (CCCH-type) family proteinAT5G56900 (2.00E-175)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000940nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM001195nucleic acid binding,
ARF Transcription_Regulator(from PlantTFDB)
B3-ARF Transcription_Regulator(from iTAK)
C3H Transcription_Regulator(from PlantTFDB)
endoplasmic reticulum,
response to hormone stimulus,
glycerol ether metabolic process,
Protein_processing_in_endoplasmic_reticulum
details
CFinderM001399RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
details
CFinderM001400Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
ribonuclease H activity,
DNA photolyase activity,
cytokinesis
aromatic amino acid family biosynthetic process,
microtubule cytoskeleton organization,
RNA metabolic process,
DNA_replication
microtubule binding,
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
protein ubiquitination,
DNA repair,
details
CFinderM001522SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
details
CFinderM001625SNF2 Transcription_Regulator(from iTAK)
cellular_homeostasis
mitochondrial outer membrane,
RNA methylation,
Homologous_recombination
details
CFinderM001695C3H Transcription_Regulator(from PlantTFDB)
DNA photolyase activity,
details

4.Expression profilings