|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | C3H Transcription_Regulator(from PlantTFDB) | 0.020142381 | GFam | | DNA photolyase activity, | 0.044208829 | GO:0003913 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000223G0420 | pumilio 2 | AT2G29190 (3.00E-139) | | PH01000370G0810 | SMAD/FHA domain-containing protein | AT2G45460 (1.00E-160) | | PH01000624G0580 | zinc ion binding | AT1G12470 (6.00E-164) | | PH01000753G0690 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT4G32820 (0.00E+00) | | PH01001219G0420 | photolyase/blue-light receptor 2 | AT2G47590 (8.00E-113) | | PH01002807G0140 | CCCH-type zinc finger family protein | AT5G56930 (3.70E-39) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000043 | C3H Transcription_Regulator(from PlantTFDB)
DNA repair,
| details | | CFinderM000591 | HB-other Transcription_Regulator(from PlantTFDB)
SNARE_interactions_in_vesicular_transport
WASH_complex
actin cytoskeleton,
spliceosomal complex,
pre-mRNA_intronic_binding
| details | | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
| details | | CFinderM001399 | RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
| details | | CFinderM001400 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
ribonuclease H activity,
DNA photolyase activity,
cytokinesis
aromatic amino acid family biosynthetic process,
microtubule cytoskeleton organization,
RNA metabolic process,
DNA_replication
microtubule binding,
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
protein ubiquitination,
DNA repair,
| details | | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
| details | | CFinderM001527 | PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
| details | | CFinderM001625 | SNF2 Transcription_Regulator(from iTAK)
cellular_homeostasis
mitochondrial outer membrane,
RNA methylation,
Homologous_recombination
| details | | CFinderM001681 | HB-other Transcription_Regulator(from PlantTFDB)
tRNA_3'-trailer_cleavage
endoribonuclease activity, producing 5'-phosphomonoesters,
regulation of transcription, DNA-dependent,
sequence-specific DNA binding,
RNA_transport
sequence-specific DNA binding transcription factor activity,
| details | | CFinderM001702 | ribosome biogenesis,
nucleolus,
eukaryotic translation initiation factor 3 complex,
RNA_transport
| details |
4.Expression profilings |
