CFinderM000591's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
HB-other Transcription_Regulator(from PlantTFDB)6.71E-05GFam
SNARE_interactions_in_vesicular_transport0.013047548KEGG
WASH_complex0.032386106GO:0071203
actin cytoskeleton,0.032386106GO:0015629
spliceosomal complex,0.036471479GO:0005681
pre-mRNA_intronic_binding0.038025631GO:0097157

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000020G1790Tetratricopeptide repeat (TPR)-like superfamily proteinAT1G06710 (0.00E+00)
PH01000279G0700Homeodomain-like transcriptional regulatorAT4G12750 (2.00E-102)
PH01000288G0110ARM repeat superfamily proteinAT5G48120 (6.10E-92)
PH01000291G0340cAMP-regulated phosphoprotein 19-related proteinAT5G64130 (4.90E-33)
PH01000340G1000Homeodomain-like transcriptional regulatorAT4G12750 (1.60E-52)
PH01000622G0600cytochrome B5 isoform BAT2G32720 (1.10E-59)
PH01000753G0690Tetratricopeptide repeat (TPR)-like superfamily proteinAT4G32820 (0.00E+00)
PH01000783G0230Vesicle transport v-SNARE family proteinAT5G39510 (2.70E-80)
PH01000856G0080-AT1G57765 (4.70E-24)
PH01001038G0480actin depolymerizing factor 2AT3G46000 (1.30E-37)
PH01001337G0430P-loop containing nucleoside triphosphate hydrolases superfamily proteinAT2G38770 (2.00E-139)
PH01002385G0200REF4-related 1AT3G23590 (3.10E-53)
PH01002612G0130Pentatricopeptide repeat (PPR) superfamily proteinAT5G65560 (1.00E-151)
PH01005548G0100-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000236NAK (from iTAK)
STAT Transcription_Regulator(from PlantTFDB)
Glycine,_serine_and_threonine_metabolism
magnesium_ion_transport
TKL-Pl-5 (from iTAK)
magnesium_ion_transmembrane_transporter_activity
details
CFinderM000804cysteine synthase activity,
chorismate mutase activity,
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
SET Transcription_Regulator(from iTAK)
cysteine biosynthetic process from serine,
aromatic amino acid family biosynthetic process,
chorismate metabolic process,
SNARE_interactions_in_vesicular_transport
Sulfur_metabolism
Cysteine_and_methionine_metabolism
details
CFinderM000938proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
details
CFinderM001014SET Transcription_Regulator(from iTAK)
endoplasmic reticulum,
nucleus,
ubiquitin ligase complex,
histone_methylation
details
CFinderM001078actin cytoskeleton,
actin_filament_depolymerization
actin binding,
intracellular,
details
CFinderM001298HB-other Transcription_Regulator(from PlantTFDB)
details
CFinderM001444nucleolus,
SNARE_interactions_in_vesicular_transport
Homologous_recombination
SOS_response
DNA metabolic process,
ribosome biogenesis,
single-stranded DNA binding,
DNA-dependent ATPase activity,
details
CFinderM001522SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
details
CFinderM001549SNARE_interactions_in_vesicular_transport
vesicle-mediated transport,
intracellular protein transport,
SNAP receptor activity,
structural molecule activity,
details
CFinderM001552HB-other Transcription_Regulator(from PlantTFDB)
Protein_processing_in_endoplasmic_reticulum
details
CFinderM001627SET Transcription_Regulator(from iTAK)
intracellular protein transport,
SNARE_interactions_in_vesicular_transport
mRNA_surveillance_pathway
details
CFinderM001629mRNA_surveillance_pathway
peptide-methionine-(S)-S-oxide reductase activity,
details
CFinderM001681HB-other Transcription_Regulator(from PlantTFDB)
tRNA_3'-trailer_cleavage
endoribonuclease activity, producing 5'-phosphomonoesters,
regulation of transcription, DNA-dependent,
sequence-specific DNA binding,
RNA_transport
sequence-specific DNA binding transcription factor activity,
details
CFinderM001695C3H Transcription_Regulator(from PlantTFDB)
DNA photolyase activity,
details
CFinderM001739mannose biosynthetic process,
phosphomannomutase activity,
ARF Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
details

4.Expression profilings


Show details about module gene expression profiling