PH01000291G0340's details annotation
1.Annotation
ICBR annotation: Lg106, putative, expressed
Blast result AT5G64130 : 4.90E-33
Blast annotation: cAMP-regulated phosphoprotein 19-related protein
2.Location
Scaffold: PH01000291
Strand: -
| Region | Start | End |
| gene | 223696 | 226298 |
| mRNA | 223696 | 226298 |
| exon | 223696 | 224253 |
| exon | 224358 | 224418 |
| exon | 224569 | 224622 |
| exon | 224720 | 224767 |
| exon | 224872 | 224934 |
| exon | 225078 | 225175 |
| exon | 225616 | 226298 |
| CDS | 224201 | 224253 |
| CDS | 224358 | 224418 |
| CDS | 224569 | 224622 |
| CDS | 224720 | 224767 |
| CDS | 224872 | 224934 |
| CDS | 225078 | 225175 |
| CDS | 225616 | 225667 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000236 | NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM000591 | HB-other Transcription_Regulator(from PlantTFDB) SNARE_interactions_in_vesicular_transport WASH_complex actin cytoskeleton, spliceosomal complex, pre-mRNA_intronic_binding |
| coexpression network | CFinderM001014 | SET Transcription_Regulator(from iTAK) endoplasmic reticulum, nucleus, ubiquitin ligase complex, histone_methylation |
| coexpression network | CFinderM001739 | mannose biosynthetic process, phosphomannomutase activity, ARF Transcription_Regulator(from PlantTFDB) SNF2 Transcription_Regulator(from iTAK) B3-ARF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04667.16 | Endosulfine | 29 | 102 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.