|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | SNF2 Transcription_Regulator(from iTAK) | 0.015210958 | GFam | | nucleolus, | 0.027444626 | GO:0005730 | | nuclear pore, | 0.030788528 | GO:0005643 | | RNA_transport | 0.04860225 | KEGG |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000043 | C3H Transcription_Regulator(from PlantTFDB)
DNA repair,
| details | | CFinderM000495 | SNF2 Transcription_Regulator(from iTAK)
proteasomal ubiquitin-dependent protein catabolic process,
nucleotide-excision repair,
ribosome biogenesis,
eukaryotic translation initiation factor 3 complex,
nucleolus,
helicase activity,
| details | | CFinderM000591 | HB-other Transcription_Regulator(from PlantTFDB)
SNARE_interactions_in_vesicular_transport
WASH_complex
actin cytoskeleton,
spliceosomal complex,
pre-mRNA_intronic_binding
| details | | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
| details | | CFinderM001156 | single-stranded DNA binding,
DNA_replication
| details | | CFinderM001272 | | details | | CFinderM001399 | RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
| details | | CFinderM001400 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
ribonuclease H activity,
DNA photolyase activity,
cytokinesis
aromatic amino acid family biosynthetic process,
microtubule cytoskeleton organization,
RNA metabolic process,
DNA_replication
microtubule binding,
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
protein ubiquitination,
DNA repair,
| details | | CFinderM001444 | nucleolus,
SNARE_interactions_in_vesicular_transport
Homologous_recombination
SOS_response
DNA metabolic process,
ribosome biogenesis,
single-stranded DNA binding,
DNA-dependent ATPase activity,
| details | | CFinderM001492 | mitochondrial inner membrane,
mitochondrial inner membrane presequence translocase complex,
nucleolus,
Ubiquitin_mediated_proteolysis
ribosome biogenesis,
| details | | CFinderM001527 | PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
| details | | CFinderM001580 | iron-sulfur cluster assembly,
RNA processing,
| details | | CFinderM001625 | SNF2 Transcription_Regulator(from iTAK)
cellular_homeostasis
mitochondrial outer membrane,
RNA methylation,
Homologous_recombination
| details | | CFinderM001678 | mRNA_cleavage_and_polyadenylation_specificity_factor_complex
mRNA cleavage,
protein retention in ER lumen,
mRNA_polyadenylation
RNA metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
ER retention sequence binding,
| details | | CFinderM001681 | HB-other Transcription_Regulator(from PlantTFDB)
tRNA_3'-trailer_cleavage
endoribonuclease activity, producing 5'-phosphomonoesters,
regulation of transcription, DNA-dependent,
sequence-specific DNA binding,
RNA_transport
sequence-specific DNA binding transcription factor activity,
| details | | CFinderM001695 | C3H Transcription_Regulator(from PlantTFDB)
DNA photolyase activity,
| details | | CFinderM001702 | ribosome biogenesis,
nucleolus,
eukaryotic translation initiation factor 3 complex,
RNA_transport
| details | | CFinderM001732 | | details | | CFinderM001739 | mannose biosynthetic process,
phosphomannomutase activity,
ARF Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
| details | | CFinderM001803 | spliceosomal complex,
mitosis,
Spliceosome
protein dephosphorylation,
| details | | CFinderM001810 | mitosis,
spliceosomal complex,
Spliceosome
| details | | CFinderM001874 | Endocytosis
Jumonji Transcription_Regulator(from iTAK)
bZIP Transcription_Regulator(from PlantTFDB)
| details |
4.Expression profilings |
